Input structure

Here is the structure needed as input for Extractor_flow.

The input root parameter is called using --input and requires the following file structure:

[root]
├── S1
│   ├── *.trk
│   └── _t1.nii.gz  (optional)
└── S2
│   ├── *trk.gz
│   └── _t1.nii.gz  (optional)

The input folder must contains subjects folders (e.g. S1, S2,…). Each subject folder contains the required images:

• *.trk is the tractogram.

• *_t1.nii.gz is the T1 weighted image.