Profiles

To select one or multiple profiles, please use the -profile option. For example:

$> nextflow run extractor_flow -r 1.0.0 --input input_folder -profile macos,fully_reproducible -with-singularity singularity_name.sif -resume

Profiles available

macos

When this profile is used, extractor_flow will modify a parameter (scratch) for MacOS users.

fully_reproducible

When this profile is used, all the parameters will be set to have 100% reproducible results. This profile consist to set multi-thread parameters to be fully reproducible.

extract_bundles

When this profile is used, it will extract bundles.